Promex 2.10/2013
Promex is a mass spectral reference database. The database consists of tryptic peptide fragmentation mass spectra derived from plants.
This release 2.10/2013 contains 105,104 tryptic peptide product ion spectra entries of 45,619 different peptide sequence entries from Medicago truncatula, Chlamydomonas reinhardtii, Bradyrhizobium japonicum, Arabidopsis thaliana, Phaseolus vulgaris, Lotus japonicus, Lotus corniculatus, Lycopersicon esculentum, Solanum tuberosum, Nicotiana tabacum, Sinorhizobium meliloti, Glycine max, Zea mays, Bos Taurus.
NEW: Search algorithm
We keep working on the program interface and usability improvement. In the current version, mzxml and mgf formated data could be uploaded. Moreover the underlying search algorithm is very fast and reliable provides strong results for both low bound and upper bound proteins.
Please cite the following article when using Promex.
Wienkoop S, Staudinger C, Hoehenwarter W, Weckwerth W and Egelhofer V (2012)
ProMEX – a mass spectral reference database for plant proteomics.
Front. Plant Sci. 3:125. doi:10.3389/fpls.2012.00125
Brassicaceae
A. thaliana
Panicoideae
Zea mays
Chlamydomonadaceae
C. reinhardtii
Fabaceae
L. corniculatus
L. japonicus
P. vulgaris
M. truncatula
Glycine max
Solanaceae
N. tabacum
S. tuberosum
L. esculentum
Rhizobiaceae
S. meliloti
B. japonicum